![]() We may have missed some things, so you're also welcomed to add whatever you think it's worth adding If you have time, you're welcomed reading everything and adding your thoughts. Unless we (joubu & paul_p) made a mistake when investigating all other lines are wrong database design and should be fixed. Short reading = the topics that are debatable are in italic. ![]() The following page tries to reference all strange things in the Koha database. They'll have to be fixed in a future version, or they are strange but assumed and are in Koha for a good reason. 2.4 Problems with SQL::Translator::* via DBIx::Class::Schema.2.3 Problems with DBIx::Class::Schema::Loader.2.2 Problems with DBIx::Class::Schema->deploy().1.5 No longer used tables and table columns.Raise RuntimeError('Aborting due to error while executing step. Please fix the problem and run this again to make sure study is completely loaded.įile "/home/jjeong/local/opt/cbioportal-2.2.0/cbioportal/core/src/main/scripts/importer/cbioportalImporter.py", line 447, in mainįile "/home/jjeong/local/opt/cbioportal-2.2.0/cbioportal/core/src/main/scripts/importer/cbioportalImporter.py", line 164, in check_versionįile "/home/jjeong/local/opt/cbioportal-2.2.0/cbioportal/core/src/main/scripts/importer/cbioportal_common.py", line 845, in run_java Run the database migration script located at CBIOPORTAL_SRC/core/src/main/scripts/migrate_db.py before continuing. Java.io.FileNotFoundException: /cbioportal.log (Permission denied)Īt java.io.FileOutputStream.open0(Native Method)Īt java.io.FileOutputStream.open(FileOutputStream.java:270)Īt java.io.FileOutputStream.(FileOutputStream.java:213)Īt java.io.FileOutputStream.(FileOutputStream.java:133)Īt .setFile(FileAppender.java:294)Īt .activateOptions(FileAppender.java:165)Īt .RollingFileAppender.activateOptions(RollingFileAppender.java:179)Īt .PropertySetter.activate(PropertySetter.java:307)Īt .tProperties(PropertySetter.java:172)Īt .tProperties(PropertySetter.java:104)Īt 圜onfigurator.parseAppender(Propert圜onfigurator.java:809)Īt 圜onfigurator.parseCategory(Propert圜onfigurator.java:735)Īt 圜nfigureRootCategory(Propert圜onfigurator.java:615)Īt 圜onfigurator.doConfigure(Propert圜onfigurator.java:502)Īt 圜onfigurator.doConfigure(Propert圜onfigurator.java:547)Īt .lectAndConfigure(OptionConverter.java:483)Īt .(LogManager.java:127)Īt .getLogger(Logger.java:104)Īt .(Log4JLogger.java:262)Īt .impl.Log4JLogger.(Log4JLogger.java:108)Īt 0(Native Method)Īt (NativeConstructorAccessorImpl.java:62)Īt (DelegatingConstructorAccessorImpl.java:45)Īt .newInstance(Constructor.java:423)Īt .(LogFactoryImpl.java:1025)Īt .(LogFactoryImpl.java:844)Īt .(LogFactoryImpl.java:541)Īt .(LogFactoryImpl.java:292)Īt .(LogFactoryImpl.java:269)Īt .LogFactory.getLog(LogFactory.java:655)Īt .dao.JdbcUtil.(JdbcUtil.java:51)Īt .(DaoInfo.java:56)Īt .(DaoInfo.java:83)Īt .(VersionUtil.java:41)Ĭhecked DB schema version: (expected: 2.8.2) (found: 2.7.3)Įrror, probably due to this version of the portal being out of sync with the database. ![]() Log4j:ERROR setFile(null,true) call failed. Importing study nowĭata loading step using /home/jjeong/local/opt/cbioportal-2.2.0/cbioportal/scripts/target/scripts-2.2.0-17-g1f2c6beb8-dirty-SNAPSHOT.jar
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